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It looks like using a virtualenv with the "Activated Env" option of Python Executable does not work right with external consoles, at least on macOS because the env we set up is not passed in through the applescript that sets up the console. I was able to get it working by changing Python Executable instead to Command Line and entering the full path of the virtualenv's Python executable, which should be in the same directory as the 'activate' that you've get it configured to now. We'll try to fix this.